scNym is a neural network model for predicting cell types from single cell profiling data (e.g. scRNA-seq) and deriving cell type representations from these models. While cell type classification is ...
This example jupyter notebook on Google Colab provides a walkthrough of ESCHR analysis using an example scRNA-seq dataset. If you launch the notebook in Google Colab ...
SCANPY is a scalable toolkit for analyzing single-cell gene expression data. It includes methods for preprocessing, visualization, clustering, pseudotime and trajectory inference, differential ...
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